Tools we are developing can be found on our GitHub page
Classification of Regulatory Elements with ATAC-seq (CoRE-ATAC).
A count based method for detecting multiplets from single nucleus ATAC-seq (snATAC-seq) data.IA-SVA
IA-SVA: A statistical method to uncover hidden and correlated sources of variation from single cell RNA-seq data.QUIN
A test designed to reduce the false positive enrichments in TF footprinting analyses.PEAS
Predicting enhancers from ATAC-seq: A neural network method to predict enhancers from ATAC-seq data an enrichment test for TF footprinting analyses.